PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497270.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 221aa    MW: 24825 Da    PI: 9.0904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32164221158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed+++v++tYeg H h
  XP_016497270.1 164 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDTSIVVTTYEGWHSH 221
                     59******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32149221IPR003657WRKY domain
SuperFamilySSF1182908.89E-28156221IPR003657WRKY domain
PROSITE profilePS5081129.631159221IPR003657WRKY domain
SMARTSM007744.4E-33164221IPR003657WRKY domain
PfamPF031064.3E-25165221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLLIKSMADK ENKLKPDTSS LEISTFSDQI PASTYSLFDM PTCETEKGSS LSLMFSSHPI  60
TTPSIFDLLQ PPPPPPVPLL VPSQLKIVNK IPSSEIVNTP NSSSISSSST EAAANDDQLQ  120
ATTKTVDDDD EHKNKKQLKP KKKNQKRQRE PRFAFMTKSE VDHLDDGFRW RKYGQKAVKN  180
SPFPRSYYRC TTATCGVKKR VERSSEDTSI VVTTYEGWHS H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-28154221774Probable WRKY transcription factor 4
2lex_A5e-28154221774Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497270.11e-163PREDICTED: probable WRKY transcription factor 48 isoform X6
TrEMBLA0A1S4C8071e-162A0A1S4C807_TOBAC; probable WRKY transcription factor 48 isoform X6
STRINGXP_009626377.11e-155(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.19e-42WRKY DNA-binding protein 23