PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016497364.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 250aa MW: 28782.4 Da PI: 9.1196

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016497364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.9	2e-49	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdeelvv+yLk+kv + +l++ ++i+e++i+k++PwdLp e+e yfFs+r+ ky++g+r+nrat+sgyWkatg dk+++s XP_016497364.1 14 LPPGFRFRPTDEELVVQYLKRKVLSFPLPA-SIIPELEIHKSDPWDLPGD---LEEERYFFSTREVKYPNGNRSNRATNSGYWKATGIDKQIVSC 104 79**************************.89***********54...46799******************************997 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvglkktLvfy+g++p+g +t+W+mheyrl XP_016497364.1 105 kGQQLVGLKKTLVFYRGKSPHGCRTNWIMHEYRL 138 46777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-58	9	165	IPR003441	NAC domain
PROSITE profile	PS51005	57.424	14	165	IPR003441	NAC domain
Pfam	PF02365	8.7E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEKLSFVKNG VLRLPPGFRF RPTDEELVVQ YLKRKVLSFP LPASIIPELE IHKSDPWDLP 60 GDLEEERYFF STREVKYPNG NRSNRATNSG YWKATGIDKQ IVSCKGQQLV GLKKTLVFYR 120 GKSPHGCRTN WIMHEYRLPN LETISIQANN NLTQENWVLC RIFLKRRDGK NEDENITHQV 180 FNSRNTSAKK AVFYDFMARE REDLNGSVPA STSFSGSSGI TELTANESDD HEESSSSFNS 240 FTTFRRKQCP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	12	166	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	12	166	18	169	NAC domain-containing protein 19
3swm_B	2e-52	12	166	18	169	NAC domain-containing protein 19
3swm_C	2e-52	12	166	18	169	NAC domain-containing protein 19
3swm_D	2e-52	12	166	18	169	NAC domain-containing protein 19
3swp_A	2e-52	12	166	18	169	NAC domain-containing protein 19
3swp_B	2e-52	12	166	18	169	NAC domain-containing protein 19
3swp_C	2e-52	12	166	18	169	NAC domain-containing protein 19
3swp_D	2e-52	12	166	18	169	NAC domain-containing protein 19
4dul_A	2e-52	12	166	15	166	NAC domain-containing protein 19
4dul_B	2e-52	12	166	15	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788540.1	0.0	PREDICTED: NAC transcription factor 29-like
Refseq	XP_016497364.1	0.0	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	2e-92	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1S4C8S8	0.0	A0A1S4C8S8_TOBAC; NAC domain-containing protein 83-like
TrEMBL	A0A1U7XPX5	0.0	A0A1U7XPX5_NICSY; NAC transcription factor 29-like
STRING	XP_009788540.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	4e-92	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]