PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016498123.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 20124 Da    PI: 9.7005
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016498123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.37.6e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_016498123.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59
                    79***********************************************96 PP
2K-box96.83.3e-3282171998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + ++++++ +qe+ kLk ++e Lq++qRh+lGedL++L+ k+L+qLe+q+++sl++iRs++++++++++ elq+ke++l e nk+Lr+k+
  XP_016498123.1  82 QPSTDSQNTYQEYLKLKTRVEVLQQSQRHILGEDLGQLNTKDLEQLERQVDSSLRQIRSTRTQHMIDELTELQQKEESLTEMNKSLRMKV 171
                     567889*********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.613161IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-34282IPR002100Transcription factor, MADS-box
CDDcd002659.63E-43276No hitNo description
PRINTSPR004042.9E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-2783171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.20787173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCSS  60
SSMSKTVEKY HKYNYAAVEG SQPSTDSQNT YQEYLKLKTR VEVLQQSQRH ILGEDLGQLN  120
TKDLEQLERQ VDSSLRQIRS TRTQHMIDEL TELQQKEESL TEMNKSLRMK VTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-30751721102Developmental protein SEPALLATA 3
4ox0_B4e-30751721102Developmental protein SEPALLATA 3
4ox0_C4e-30751721102Developmental protein SEPALLATA 3
4ox0_D4e-30751721102Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0725340.0AF072534.1 Capsicum annuum pepper MADS-box protein (PepMADS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773225.11e-124PREDICTED: MADS-box protein CMB1-like isoform X3
RefseqXP_016498123.11e-124PREDICTED: MADS-box protein CMB1
SwissprotK4BND82e-96MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A1S4CAF41e-123A0A1S4CAF4_TOBAC; MADS-box protein CMB1
TrEMBLA0A1U7WG561e-123A0A1U7WG56_NICSY; MADS-box protein CMB1-like isoform X3
STRINGXP_009773223.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]