PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016498370.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 282aa    MW: 30441.4 Da    PI: 8.3434
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016498370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP50.65.2e-1627564776
                    SSEEETTT--SS--S-STTTT-------S- CS
             SBP 47 srfhelsefDeekrsCrrrLakhnerrrkk 76
                    srfh+l efD++krsCrrrLa+hnerrrk+
  XP_016498370.1 27 SRFHRLPEFDQGKRSCRRRLAGHNERRRKP 56
                    9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.648156IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.2E-42743IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.12E-132761IPR004333Transcription factor, SBP-box
PfamPF031101.4E-82755IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLVCNWLTIS LISCFSLPGI NGWYFASRFH RLPEFDQGKR SCRRRLAGHN ERRRKPPPGS  60
LLSNRYGSLS SSIFENNGRS GSFLVDFTAY PNLTGGAWPN TRSSERGWDN QSTASGKLLQ  120
SHWLNSSENP TSDLVLQGSV ARGANYSGPG IIPSGNCFSG VSDSSGALSL LSNESWGSRN  180
QSSSLGVNDL VNTDGGHTVQ PSGSHAAPVN HYSGPQWGFK GNEASSSSHA IPPDLGLGHI  240
SQLAVNQYSA ELGMAQHSGR QYMELEHSKG YDSSVQNVHW TL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732990.0LC073299.1 Nicotiana tabacum NtabSPL9b mRNA for squamosa promoter binding protein NtabSPL9b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498370.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A1S4CB560.0A0A1S4CB56_TOBAC; squamosa promoter-binding-like protein 9
STRINGXP_009612109.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-31squamosa promoter binding protein-like 9