PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016498397.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 386aa MW: 43752.9 Da PI: 6.1718

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016498397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.5e-52	15	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLp+ ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ XP_016498397.1 15 LPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPRLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSd 108 69*************************.89***********8888899***********************************95 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra +g ktdW+mhe+rl XP_016498397.1 109 STKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 5666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-58	13	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.65	14	173	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MDNKSDVEKL DEAILPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP 60 RLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTTTIDSAP PRKFLDKNFP PNDSWAICRI FKKTNSIANR 180 ALSYPWINPL SDVASPEVFN QSTTVHFSAE NISSLTETGS LLHLSSTNDL LQGASNVPSY 240 KTLNTMVSRP SFLSSPSTEV PCNFMFSSPE VSMFFNTPPA LKNADIKTSE TIDFEGSNQQ 300 MNSFSISSSQ EMQRSIGMED DEAGLRSNQD STNDNTTQWE NIRSIGFPFS LTTSLADEWK 360 PSLSWDSPSC PSEISTTYDS TNKCYS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MDNKSDVEKL DEAILPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP  60
RLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV  120
FYRGRAARGI KTDWMMHEFR LPTTTIDSAP PRKFLDKNFP PNDSWAICRI FKKTNSIANR  180
ALSYPWINPL SDVASPEVFN QSTTVHFSAE NISSLTETGS LLHLSSTNDL LQGASNVPSY  240
KTLNTMVSRP SFLSSPSTEV PCNFMFSSPE VSMFFNTPPA LKNADIKTSE TIDFEGSNQQ  300
MNSFSISSSQ EMQRSIGMED DEAGLRSNQD STNDNTTQWE NIRSIGFPFS LTTSLADEWK  360
PSLSWDSPSC PSEISTTYDS TNKCYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-53	16	176	17	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122544	2e-84	AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence.
GenBank	AC226507	2e-84	AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence.
GenBank	EU161283	2e-84	EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds.
GenBank	HG975441	2e-84	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	2e-84	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016498397.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-100	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S4CAZ4	0.0	A0A1S4CAZ4_TOBAC; putative NAC domain-containing protein 94
STRING	XP_009600694.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-103	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]