PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016498579.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 328aa    MW: 37056.9 Da    PI: 8.7347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016498579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.6e-07157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_016498579.1 157 HYCQVCGKGFKRDANLRMHMRAH 179
                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.64E-6156181No hitNo description
PROSITE profilePS5015712.653157184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-7157216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034157179IPR015880Zinc finger, C2H2-like
PfamPF128740.0019158177No hitNo description
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SMARTSM0035574213246IPR015880Zinc finger, C2H2-like
SMARTSM0035527251273IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MFISTDNQTI VQASESTSMA IANMGSLIQE IITTASSLMF SCQKISLGSN STTNNINSSR  60
FLEPSQIKLQ DDGHVDHLPQ GFYSNETLDH WYEENYASCS NIEDNKSHST IIANTDHSNV  120
QLGKRKFKNE GMQNISSQEN CDIIELEAAD LLAKYTHYCQ VCGKGFKRDA NLRMHMRAHG  180
DEYKSNAALS NPLKNNGNNN GINDGLSKLS KKYSCPQEGC RWNKKHAKFQ PLKSMICVKN  240
HYKRSHCPKM YMCNRCNKKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHVALF  300
VGHTPVINSL AKMRKYEQNN VQFSSITG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498579.10.0PREDICTED: zinc finger protein STAR3-like
SwissprotQ0WT241e-103STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1S4CC990.0A0A1S4CC99_TOBAC; zinc finger protein STAR3-like
STRINGXP_009601613.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-102C2H2 family protein