PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016499459.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 261aa MW: 27675.3 Da PI: 5.4319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016499459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.8	7.2e-07	167	193	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + XP_016499459.1 167 SHSLAERARREKISERMKILQDLVPGC 193 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.66E-5	161	202	No hit	No description
SuperFamily	SSF47459	3.53E-8	161	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.82	163	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-8	166	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-4	167	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTDLLEAAAN 60 SVNESTVTEQ SGRSGGGGGT AAVRKRDVNS EDDSSKLVST SDANDLQDGS VAKRQKASES 120 KEENGGSKVE AESSSRTVNK GTEQSSKPEP PKDYIHVRAR RGQATDSHSL AERARREKIS 180 ERMKILQDLV PGCNKFLSMK LEAVNSRMSH PIDTFPSKDL APSAFDATGM IFGAQAPREY 240 AQGAQSEWLH MQVGSSFDRA T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	7e-56	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631985.1	0.0	PREDICTED: transcription factor bHLH79 isoform X3
Refseq	XP_016499459.1	0.0	PREDICTED: transcription factor bHLH79-like isoform X3
Swissprot	Q9LV17	5e-62	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1S4CES7	0.0	A0A1S4CES7_TOBAC; transcription factor bHLH79-like isoform X3
STRING	XP_009631983.1	1e-165	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]