PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016499476.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 222aa MW: 24597.2 Da PI: 9.0483

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016499476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.5	3.2e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl+yeA r+ +Pv+G+vg+++++++q++q+ XP_016499476.1 2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRAGLMSFISAVPRNQRPGLFQSLLYEAAGRTVNPVNGVVGLLWTGNWQICQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 +++++l+ XP_016499476.1 97 AVDTVLR 103 9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.684	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRAGLMS FISAVPRNQR 60 PGLFQSLLYE AAGRTVNPVN GVVGLLWTGN WQICQAAVDT VLRGGTLSPI PELFGKSAEV 120 DEESECTNVF KLQNHTQNTR SKMQKRCRSS DEAAAKVLQL ENLDLSLLTR GFQSEIVHSS 180 LPEKRRSRTP SRKSEVSVTT TCFDSSLGHH QGKQLRLLSL FT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016499476.1	1e-164	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	3e-75	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1S4CED5	1e-163	A0A1S4CED5_TOBAC; LOB domain-containing protein 37-like
STRING	XP_009630227.1	1e-161	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-77	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]