PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016500153.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 555aa MW: 61014.7 Da PI: 8.3202

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016500153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.5e-06	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H XP_016500153.1 93 FFCEICNKGFKRDQNLQLHRRGH 115 67*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.7E-5	92	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.77E-7	92	115	No hit	No description
PROSITE profile	PS50157	10.741	93	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.021	93	115	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	9.3E-6	93	115	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	99	135	165	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.0E-4	158	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.77E-7	165	190	No hit	No description
SMART	SM00355	160	170	190	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MMKGLMNNIQ QTQQHVHIVE ENMSNLTSAS GDQASISASS NMNDTTTGSF FISQNQNPQQ 60 QQIKKKRNQA GNPDPEAEVI ALSPKTLLAT NRFFCEICNK GFKRDQNLQL HRRGHNLPWK 120 LKQRTNKEVI KKKVYVCPEP SCVHHDSTRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA 180 VQSDCKAHSK TCGTREYRCE CGTLFSRRDS FITHRAFCDT LAVESARSAI TGGNPIISFS 240 SQAAGSTSTS HMNQLQFQTP QYVNNSHEFT AAAAFSMKKE QPNYDFNHLR HNTEIPQWLM 300 SCQPFVGAGP GPPSSVPADF SSSVFQATRL NQEYTQSHQD LTSTDFHENP NPNFGAVSPH 360 ISATALLQKA AELSATMSNK ANSVSASSPA HNTDPAAILL RQLPHQTHVS VTTDSAAAVG 420 NKQTDQFGLN LSSREFELTN NTGLIINTLG NSYGNKAAAA TVPSFSFTNA TGFEGSTFED 480 AFGGFGSLNS KKDNDFNGTT LSETTSGIND DIMTKDFLGL RPLSHNDIFN IAGLVNTTTS 540 SSEHDQFQNH KTWQS

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MMKGLMNNIQ QTQQHVHIVE ENMSNLTSAS GDQASISASS NMNDTTTGSF FISQNQNPQQ  60
QQIKKKRNQA GNPDPEAEVI ALSPKTLLAT NRFFCEICNK GFKRDQNLQL HRRGHNLPWK  120
LKQRTNKEVI KKKVYVCPEP SCVHHDSTRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA  180
VQSDCKAHSK TCGTREYRCE CGTLFSRRDS FITHRAFCDT LAVESARSAI TGGNPIISFS  240
SQAAGSTSTS HMNQLQFQTP QYVNNSHEFT AAAAFSMKKE QPNYDFNHLR HNTEIPQWLM  300
SCQPFVGAGP GPPSSVPADF SSSVFQATRL NQEYTQSHQD LTSTDFHENP NPNFGAVSPH  360
ISATALLQKA AELSATMSNK ANSVSASSPA HNTDPAAILL RQLPHQTHVS VTTDSAAAVG  420
NKQTDQFGLN LSSREFELTN NTGLIINTLG NSYGNKAAAA TVPSFSFTNA TGFEGSTFED  480
AFGGFGSLNS KKDNDFNGTT LSETTSGIND DIMTKDFLGL RPLSHNDIFN IAGLVNTTTS  540
SSEHDQFQNH KTWQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-31	166	227	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-31	166	227	3	64	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016500153.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Swissprot	Q8H1F5	1e-118	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S4CG88	0.0	A0A1S4CG88_TOBAC; protein indeterminate-domain 7-like isoform X1
STRING	XP_009603433.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-113	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]