PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500183.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 204aa    MW: 22759.4 Da    PI: 8.9248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.1e-15118168255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+++AeIrdp   + k  r+ lg+f+   +Aa+a++ a+ k++g
  XP_016500183.1 118 NYRGVRRRP-WGKFAAEIRDP---NkKGSRILLGTFDADVDAARAYDCAAFKMRG 168
                     59*******.**********9...4345**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-21118177IPR016177DNA-binding domain
SMARTSM003802.3E-34118182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-29118177IPR001471AP2/ERF domain
PROSITE profilePS5103222.616118176IPR001471AP2/ERF domain
PfamPF008472.5E-10118168IPR001471AP2/ERF domain
CDDcd000183.25E-28119176No hitNo description
PRINTSPR003674.6E-13119130IPR001471AP2/ERF domain
PRINTSPR003674.6E-13158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTTQEEGLTL ELIRQHLLED FTSKESFIDS LNSCFTDHIS PTLTSVKTEP STSNNSLSDS  60
PTSYPNSPIS HYFSNFPEFN TNSDTNLSPT SDSCVSSRST ISSDTMSGNN NENDKKKNYR  120
GVRRRPWGKF AAEIRDPNKK GSRILLGTFD ADVDAARAYD CAAFKMRGRK AILNFPLDAG  180
KSRAPANIGR KRRRDLGMEL KMLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26115177264ATERF1
3gcc_A2e-26115177264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8744230.0KJ874423.1 Nicotiana tabacum ethylene response factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500183.11e-150PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1S4CGC11e-149A0A1S4CGC1_TOBAC; ethylene-responsive transcription factor ERF106-like
STRINGXP_009597659.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.16e-48ERF family protein