PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016500275.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 421aa MW: 45074.6 Da PI: 8.5859

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016500275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.2	4.2e-40	118	223	5	112
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ka 90 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ XP_016500275.1 118 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplfI- 211 899***************************************************************9997777777777633333333333441. PP TCP 91 aksaakskksqksaasalnlak 112 + a+++l +++ XP_016500275.1 212 ----------HGGATTMLGFHH 223 ..........333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.705	121	175	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.5E-38	121	249	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MEFMEPHRKK QSRGSSTSGT DHHHHQHAQH QQQQQHNQET PSSLQLVSPH QSQPDPPTPG 60 SNQPHPHPHG PFMGSISMQS RTLISPPSAN NSSTSTTPTT TPTETPTPNN ILSTKVVKKP 120 SKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT 180 IPANFSTLNV SLRSSGTTIS APPSKSAPLF IHGGATTMLG FHHQLSNAGF GQDPDENNYM 240 KKRLREDTSG ATSPSGDKPE RTGVQPPEPG SDSKPGSSQT SSFIPAPAMW AVAPAAGNVG 300 NAFWMLPVSG GTSSTTASVG VAQPDHQLWR SRIGGFEFPG GGRFSPVQLG SMVLQQSQPV 360 QQLGLGVTET NMGMLSSMNN AYNSSGNNRV DLGMNLEQHH HHQNQTQGSD SGDENHKDSQ 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MEFMEPHRKK QSRGSSTSGT DHHHHQHAQH QQQQQHNQET PSSLQLVSPH QSQPDPPTPG  60
SNQPHPHPHG PFMGSISMQS RTLISPPSAN NSSTSTTPTT TPTETPTPNN ILSTKVVKKP  120
SKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT  180
IPANFSTLNV SLRSSGTTIS APPSKSAPLF IHGGATTMLG FHHQLSNAGF GQDPDENNYM  240
KKRLREDTSG ATSPSGDKPE RTGVQPPEPG SDSKPGSSQT SSFIPAPAMW AVAPAAGNVG  300
NAFWMLPVSG GTSSTTASVG VAQPDHQLWR SRIGGFEFPG GGRFSPVQLG SMVLQQSQPV  360
QQLGLGVTET NMGMLSSMNN AYNSSGNNRV DLGMNLEQHH HHQNQTQGSD SGDENHKDSQ  420
S

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016500275.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9C518	3e-69	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1S4CGH4	0.0	A0A1S4CGH4_TOBAC; transcription factor TCP23-like
STRING	XP_009775051.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	8e-60	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]