PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500454.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 562aa    MW: 63612.1 Da    PI: 9.7241
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-19115164154
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     ++y+GVr++k +g+W+AeIrd      +++r +lg+f+taeeAa a+++a+ +++
  XP_016500454.1 115 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIR 164
                     59*******9.**********55....35**********************9987 PP
2AP2605.4e-19481531256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr++k +g+W+AeIrd +   kr+r +lg+f+ta+eAa a+++a+ +++g+
  XP_016500454.1 481 KYRGVRQRK-WGKWAAEIRDTR---KRTRTWLGTFDTAYEAALAYDKAAIEIRGA 531
                     8*******9.**********42...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-27115164No hitNo description
PfamPF008472.2E-14116165IPR001471AP2/ERF domain
PROSITE profilePS5103221.074116177IPR001471AP2/ERF domain
SMARTSM003808.2E-27116176IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-18116164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-25116166IPR001471AP2/ERF domain
PRINTSPR003675.7E-11117128IPR001471AP2/ERF domain
PRINTSPR003675.7E-11139155IPR001471AP2/ERF domain
PfamPF008472.2E-13481530IPR001471AP2/ERF domain
PROSITE profilePS5103221.601481538IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-19481537IPR016177DNA-binding domain
SMARTSM003802.8E-33481544IPR001471AP2/ERF domain
CDDcd000185.28E-30481536No hitNo description
Gene3DG3DSA:3.30.730.101.7E-27481536IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MTVSRELIQT MASQEKYQKK EAVEKPPEID VVEKSNNQVG ESSGALPHLV RIHVTDRDAT  60
DSSSDEEEKA GGAKTEQHGK TCVKEIIIEN GKTEVIPKKK SKEKKDITVL QGDVKKYRGV  120
RQRKWGKWAA EIRDARRKTR LWLGTFDTAE EAALAYDKAA IEIRAMASQE EHQKNEAVEK  180
PSEIDVVEKP SEVDVVEKPS KIDLVEKSIN QVGESSVVLP RVVRIHLPDS SSDDEEKVEG  240
EKSKRHVRTC VKEIIIENGK TTVISKKSRE KKDIKLLQEN AKKRIHVPES DATDSSSDNE  300
EKVEGEKSKR HERMCLNETI IENGKTHVIS KKKSNEKKDV KLLQENAKKR ICVPDCDATD  360
SSSGDEENVE GEKSKRHELT GAKEIVIENG KTQVISKKKS KERKHKKLLQ ENVKKRTHVL  420
DHDTTDSSSD DEVKAEGKKS QQQEKTCAKE ITFENGKTEV ISKKKSKEKK DIMLLQGNVN  480
KYRGVRQRKW GKWAAEIRDT RKRTRTWLGT FDTAYEAALA YDKAAIEIRG ANALTNIIKP  540
PPRKEINIIF KIPSLPADDA RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17115536158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413417KKRTH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500454.10.0PREDICTED: uncharacterized protein LOC107818896 isoform X1
TrEMBLA0A1S4CHG90.0A0A1S4CHG9_TOBAC; uncharacterized protein LOC107818896 isoform X1
STRINGXP_009627599.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.17e-20ERF family protein