PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500455.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 552aa    MW: 62452.7 Da    PI: 9.7241
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19105154154
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     ++y+GVr++k +g+W+AeIrd      +++r +lg+f+taeeAa a+++a+ +++
  XP_016500455.1 105 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIR 154
                     59*******9.**********55....35**********************9987 PP
2AP260.15.3e-19471521256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr++k +g+W+AeIrd +   kr+r +lg+f+ta+eAa a+++a+ +++g+
  XP_016500455.1 471 KYRGVRQRK-WGKWAAEIRDTR---KRTRTWLGTFDTAYEAALAYDKAAIEIRGA 521
                     8*******9.**********42...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-27105154No hitNo description
PROSITE profilePS5103221.074106167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-25106156IPR001471AP2/ERF domain
PfamPF008472.1E-14106155IPR001471AP2/ERF domain
SMARTSM003808.2E-27106166IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-18106154IPR016177DNA-binding domain
PRINTSPR003675.5E-11107118IPR001471AP2/ERF domain
PRINTSPR003675.5E-11129145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-27471526IPR001471AP2/ERF domain
PfamPF008472.2E-13471520IPR001471AP2/ERF domain
SMARTSM003802.8E-33471534IPR001471AP2/ERF domain
CDDcd000185.89E-30471526No hitNo description
SuperFamilySSF541712.03E-19471527IPR016177DNA-binding domain
PROSITE profilePS5103221.601471528IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MASQEKYQKK EAVEKPPEID VVEKSNNQVG ESSGALPHLV RIHVTDRDAT DSSSDEEEKA  60
GGAKTEQHGK TCVKEIIIEN GKTEVIPKKK SKEKKDITVL QGDVKKYRGV RQRKWGKWAA  120
EIRDARRKTR LWLGTFDTAE EAALAYDKAA IEIRAMASQE EHQKNEAVEK PSEIDVVEKP  180
SEVDVVEKPS KIDLVEKSIN QVGESSVVLP RVVRIHLPDS SSDDEEKVEG EKSKRHVRTC  240
VKEIIIENGK TTVISKKSRE KKDIKLLQEN AKKRIHVPES DATDSSSDNE EKVEGEKSKR  300
HERMCLNETI IENGKTHVIS KKKSNEKKDV KLLQENAKKR ICVPDCDATD SSSGDEENVE  360
GEKSKRHELT GAKEIVIENG KTQVISKKKS KERKHKKLLQ ENVKKRTHVL DHDTTDSSSD  420
DEVKAEGKKS QQQEKTCAKE ITFENGKTEV ISKKKSKEKK DIMLLQGNVN KYRGVRQRKW  480
GKWAAEIRDT RKRTRTWLGT FDTAYEAALA YDKAAIEIRG ANALTNIIKP PPRKEINIIF  540
KIPSLPADDA RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17105526158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403407KKRTH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500455.10.0PREDICTED: uncharacterized protein LOC107818896 isoform X2
TrEMBLA0A1S4CH060.0A0A1S4CH06_TOBAC; uncharacterized protein LOC107818896 isoform X2
STRINGXP_009627599.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.16e-20ERF family protein