PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501009.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 165aa    MW: 19209.8 Da    PI: 6.0478
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.6e-161693998
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      +k++ l +p  f+ ++  g ++   +  +  + g++W vk+  ++++    l++GW++F+++++L+ gD++vF+++g++ef  +v +f+
  XP_016501009.1 16 PGFKHA-LNIPLGFL-KYlTGHEH---EHAVLKRAGKKWLVKV--NGHR----LEEGWEKFAEEHDLQLGDMLVFRHEGNMEF--KVVIFD 93
                    455555.9*******.66554533...4577889*********..7777....*************************99999..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-22595IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.449795IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-21797IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-17893No hitNo description
SMARTSM010199.0E-151095IPR003340B3 DNA binding domain
PfamPF023621.7E-121893IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKVPPVKPHF FKPIQPGFKH ALNIPLGFLK YLTGHEHEHA VLKRAGKKWL VKVNGHRLEE  60
GWEKFAEEHD LQLGDMLVFR HEGNMEFKVV IFDSGHCKRE YAENLQEEEE EKEEEEEEEA  120
GGGGRGGEEK RKNEEEKRNK EKKLILVNLF LNAQLDPIGF PTVTW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130143RKNEEEKRNKEKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501009.11e-115PREDICTED: B3 domain-containing protein REM9-like
TrEMBLA0A1S4CJ211e-113A0A1S4CJ21_TOBAC; B3 domain-containing protein REM9-like
STRINGXP_009614318.19e-78(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.19e-19B3 family protein