PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501064.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 196aa    MW: 21259.7 Da    PI: 4.8302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-182677155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+G+r++k++g+Wv+eIr+p     r   r++lg+f tae+Aa a++ a+ +l+g
  XP_016501064.1 26 PVYRGIRRRKSSGKWVSEIREP-----RspNRIWLGTFPTAEMAAVAYDVAAIALKG 77
                    68*******************9.....4489**********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-112677IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-192787IPR016177DNA-binding domain
PROSITE profilePS5103222.552785IPR001471AP2/ERF domain
SMARTSM003802.0E-322791IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-282787IPR001471AP2/ERF domain
CDDcd000183.51E-282887No hitNo description
PRINTSPR003672.0E-52839IPR001471AP2/ERF domain
PRINTSPR003672.0E-55167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MATYGGSNTN IGGSATTPDN YSGRHPVYRG IRRRKSSGKW VSEIREPRSP NRIWLGTFPT  60
AEMAAVAYDV AAIALKGRDT DLNFPNSAAS LPVPATSSPR DIQAAAASAA AAVGAAGDAL  120
LARREVHDQK SKLISENLGF ENNYEFMDED LIFDMPNVLV NMAEGMLLSP PRFNLPDEDF  180
AAAAEYTAYQ NLWNYP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754484e-32HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755214e-32HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501064.11e-142PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-56ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1S4CJH01e-141A0A1S4CJH0_TOBAC; ethylene-responsive transcription factor ERF024-like
STRINGXP_009793202.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-46ERF family protein