PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502035.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 343aa    MW: 38725.6 Da    PI: 7.1942
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06115135526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G C +Gd C FaHg
  XP_016502035.1 115 ACPDFRK-GNCLRGDGCEFAHG 135
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-4110136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878111137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5115137IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.559145169IPR000571Zinc finger, CCCH-type
SMARTSM0035612145168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MIGGKNHHLN PTVDIPPWPY TDDQTANMHF MLSPNENSNS TPNFAEDYCS QFELENGEIE  60
LPVDMYACDN FRMFEFKVRN CARGRSHDWT ECPYLHPGEK ARRRDPRKYH YSGTACPDFR  120
KGNCLRGDGC EFAHGVFECW LHPARYRTQP CKDGVNCKRR VCFFAHSADQ LRVLSPNTDS  180
AFEHQSPRLC GRALQFVSSP ESSSPPTESP PMSPMMSRSL GSNSVNDVMA SLRQLQLSRL  240
NSMPSAWKVQ LGSPRLGSPG RPVTRPGFCS LPVTPTGELA RPGKRCFDLW EEEPVFERVE  300
SGRELRVKMF ARLSKENPLD GVNPNLNSDA PNPDVGWVSD LIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502035.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-114C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S4CLN60.0A0A1S4CLN6_TOBAC; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009802285.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-104C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]