PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502647.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 295aa    MW: 34228.2 Da    PI: 5.1747
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.96.1e-1478114339
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 
                     i+++  r+ tf kR++ ++KK +ELS+LCd+++++ii
  XP_016502647.1  78 IQDEKTRKSTFQKRKACLIKKISELSILCDIKACMII 114
                     899999******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-1768125IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.29768114IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-1869150IPR002100Transcription factor, MADS-box
CDDcd002666.50E-1969144No hitNo description
PRINTSPR004041.8E-67090IPR002100Transcription factor, MADS-box
PfamPF003192.9E-1478117IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-690105IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
IDASDISVCF MLIKQLLLCF LQKIDQEDKD DSSIIQLLSP TGKNIANISV EVAITEKSFK  60
YSSGQIKMGR SKIKMELIQD EKTRKSTFQK RKACLIKKIS ELSILCDIKA CMIINEGNNY  120
EVISPQIWPN DPNEVQELIN FYKNQPKREN SLCSFLENEK KKAEIKMEKL KTKIKTEKYP  180
TWDSRFNYLS EKELRNLAGV LEKKMENAKG KSEFLKSSRN INQDSNQEIW DYPELMDNFN  240
QSNIQPISYM DNQFFQELTA DNVNSMGILD NIDLNVGDYE FGNSDYMKIR QEGLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502647.10.0PREDICTED: agamous-like MADS-box protein AGL82, partial
TrEMBLA0A1S4CMZ30.0A0A1S4CMZ3_TOBAC; agamous-like MADS-box protein AGL82
STRINGXP_009789447.11e-156(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-21M-type_MADS family protein