PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502822.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 411aa    MW: 45142.4 Da    PI: 7.5018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11339384655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L +l P+     +k  + a++L +Av+YIk+Lq
  XP_016502822.1 339 SIAERMRRTRISQRMKKLHDLFPNM----DKQTNTADMLDLAVDYIKDLQ 384
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.948333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-15336401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.36E-12337388No hitNo description
Gene3DG3DSA:4.10.280.102.8E-14338398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8339384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-11339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MFSSTEPISR EMDKFNSFLF SSGGGSSSNF KNGGELQGME TEFLRNKEIM CSDYFQQQSS  60
QFHQQSNNNG GGLTRYRSAP SSFFAGILDG DGNNSGENFI THDGSSSSDS ESMFTALLNN  120
NDNNNVNNNN NNNNNVTVSG TRDLNDQISK NQLQFGSSSS MKQEIGEEIK FASSAMGSYG  180
VGVQMQSGVR LSNGNGGGSN NLIRQSSSPA GFFNGFDITR EVGNYRASSG ANMSFSSAQS  240
STSNFMPSIA ENESWNDSIF HSLKRNRDGD LKVFSNDFNG MTSQNAESRN FTTSGLTHHI  300
SLPKTSSEMA AIEKYLQFQQ DSVPCKIRAK RGCATHPRSI AERMRRTRIS QRMKKLHDLF  360
PNMDKQTNTA DMLDLAVDYI KDLQKQVQTL TDKKATCSCP SKQLQCSNGT T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3274391e-76JF327439.1 Nicotiana attenuata clone NA541 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502822.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A1S4CNI20.0A0A1S4CNI2_TOBAC; transcription factor bHLH130-like
STRINGXP_009612393.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-57bHLH family protein