PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016503356.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 179aa MW: 20174 Da PI: 8.3347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016503356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.3e-12	17	66	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +E++RR++++ + +L +l+P++ ++s+ ls + Le+A++YIk Lq XP_016503356.1 17 RKTIEKNRRNQMKALYLKLHSLVPHQ--QHSREvLSLPDQLEEAINYIKRLQ 66 6789*******************6..488889***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.83E-6	10	69	No hit	No description
SuperFamily	SSF47459	1.83E-11	11	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.344	12	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-10	14	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	18	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MEQQCNNPSS SSSKADRKTI EKNRRNQMKA LYLKLHSLVP HQQHSREVLS LPDQLEEAIN 60 YIKRLQIDLG RMTQKKDSLK SGENSSCGRK IGLPLPHIEI NSVDSALQVV ITTSLDYQFI 120 FTDVIRLLHE ESVQVINANY TLIGDTIVHS IHSQMGECAP DQYGAARISE RLKKFVGGC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503356.1	1e-131	PREDICTED: transcription factor bHLH55-like
TrEMBL	A0A1S4CQM5	1e-130	A0A1S4CQM5_TOBAC; transcription factor bHLH55-like
STRING	XP_009792659.1	1e-130	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5105	21	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-35	bHLH family protein