PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016503456.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 142aa    MW: 16227.2 Da    PI: 10.0585
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016503456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.2e-165498549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++ +r+v +  R ++++ KAeELSvLC++e+ +++fs+++k  ey
  XP_016503456.1 54 DECRRSVVLQERMETLFRKAEELSVLCGVEIGIVVFSPDQKNVEY 98
                    5789***********************************997666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-842102IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.94242102IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-74464IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-1745136IPR002100Transcription factor, MADS-box
PfamPF003191.2E-145498IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-76479IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-779100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAVSAANPLL LDLSGTCSAG GTVPGATTFE HSQLQKKVHF VSSLKKIKIA MLVDECRRSV  60
VLQERMETLF RKAEELSVLC GVEIGIVVFS PDQKNVEYEW PPRDKFKQLL MRFLDKPLVE  120
RLKKLTTNEM FLRKEMEKTK KK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503456.11e-100PREDICTED: agamous-like MADS-box protein AGL36
TrEMBLA0A1S4CQW82e-99A0A1S4CQW8_TOBAC; agamous-like MADS-box protein AGL36
STRINGXP_009801509.15e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-14AGAMOUS-like 36