PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016503459.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 259aa MW: 28738.7 Da PI: 8.6384

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016503459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_016503459.1 73 FSCSFCKREFSTSQALGGHQNAH 95 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.0E-4	63	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.04E-6	70	100	No hit	No description
PROSITE profile	PS50157	11.552	73	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MKGKVMDLGS ELKPHELSSA GVLLDLKVHN GASNLELNLF NLTSSIKNSA PASESSNEGT 60 PNKQRRSSET RVFSCSFCKR EFSTSQALGG HQNAHKQERA LAKRRNALVD VVSPFGPPNY 120 HTYYNPYSSY TTHLPFHGSF TSRSSLGVQG HSSAIHKPSP YNPWSAFSGY NYRFNPEKWS 180 SSGSSLFRTE NLGIGSAPLE NSLKFENKNS AKGFSVRDSP VKVDNNRDGN NKRKMGFVEE 240 DAEENEEESE IDLDLNLRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503459.1	0.0	PREDICTED: zinc finger protein 4-like
TrEMBL	A0A1S4CR18	0.0	A0A1S4CR18_TOBAC; zinc finger protein 4-like
STRING	XP_009600727.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	8e-23	zinc finger protein 3