PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016503569.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 189aa MW: 21277.5 Da PI: 6.295

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016503569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.9	6.1e-37	15	112	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C+aCk+lrr+C++dC++ p+fp ++p+kf +vh++FGasn++k+l++ p ++reda+ s+vyeA ar+rdPvyG+vg+i+++q+++ +l++el XP_016503569.1 15 PCSACKFLRRRCTQDCIFLPHFPTAEPQKFIAVHRIFGASNISKILQQEiPVDNREDAVISMVYEATARLRDPVYGCVGIISAVQKHVFHLQSEL 109 7*******************************************87648888**************************************9 PP DUF260 95 all 97 +++ XP_016503569.1 110 NEA 112 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.357	14	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-39	15	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MFFMGSTNKK NKHMPCSACK FLRRRCTQDC IFLPHFPTAE PQKFIAVHRI FGASNISKIL 60 QQEIPVDNRE DAVISMVYEA TARLRDPVYG CVGIISAVQK HVFHLQSELN EALAEAMFLR 120 TQLSDALSLP SLIEGSPFTP ENHEFLHFQK PSEQNAYANA SDALLLLPEA ADHYCLQGTE 180 VLPLPYLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	15	133	11	126	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	15	133	11	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-87	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503569.1	1e-140	PREDICTED: LOB domain-containing protein 25-like isoform X1
Swissprot	Q8L8Q3	1e-41	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S4CRC5	1e-138	A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRING	Solyc06g082770.2.1	1e-92	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-44	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]