PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016503570.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 188aa MW: 21149.3 Da PI: 6.295

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016503570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.6	2.1e-38	15	111	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C+aCk+lrr+C++dC++ p+fp ++p+kf +vh++FGasn++k+l+++p ++reda+ s+vyeA ar+rdPvyG+vg+i+++q+++ +l++el+ XP_016503570.1 15 PCSACKFLRRRCTQDCIFLPHFPTAEPQKFIAVHRIFGASNISKILQEIPVDNREDAVISMVYEATARLRDPVYGCVGIISAVQKHVFHLQSELN 109 7********************************************************************************************99 PP DUF260 96 ll 97 ++ XP_016503570.1 110 EA 111 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.311	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-40	15	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MFFMGSTNKK NKHMPCSACK FLRRRCTQDC IFLPHFPTAE PQKFIAVHRI FGASNISKIL 60 QEIPVDNRED AVISMVYEAT ARLRDPVYGC VGIISAVQKH VFHLQSELNE ALAEAMFLRT 120 QLSDALSLPS LIEGSPFTPE NHEFLHFQKP SEQNAYANAS DALLLLPEAA DHYCLQGTEV 180 LPLPYLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	15	132	11	126	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	15	132	11	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-84	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503570.1	1e-139	PREDICTED: LOB domain-containing protein 25-like isoform X2
Swissprot	Q8L8Q3	2e-43	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S4CR38	1e-138	A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2
STRING	Solyc06g082770.2.1	6e-90	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	9e-46	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]