PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016503803.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 351aa    MW: 40637.8 Da    PI: 5.6877
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016503803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.8e-34581502103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkk++e+++d++++++isws++++sfvv+d+++f+ ++Lpk+Fkh+nf+SF+RQLn+Y F+k+++++         weF+++ F+kgkk+ll +
  XP_016503803.1  58 FLKKTFEMVDDPNTDSIISWSNTKTSFVVWDPHKFSIDLLPKHFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGFQKGKKHLLVN 143
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr+k++
  XP_016503803.1 144 IKRRKQQ 150
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.0E-3454147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5454147IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3754147IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.1E-3158147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-185881IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-18109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEQEKMVTDE VINGGLLTVK EEPVLFLDEE DIIGNSEFSS SLLPKPLEGL RDVGPPPFLK  60
KTFEMVDDPN TDSIISWSNT KTSFVVWDPH KFSIDLLPKH FKHNNFSSFI RQLNTYRFRK  120
IDSDRWEFAN EGFQKGKKHL LVNIKRRKQQ YTHQGLGSGS AQSWLGSCNK DGVEAELEKL  180
RKDQNTLKME IHSLKQQQEN TESYLATVKE RLQNSETRQK YMVIFMAKAF KNPLFVQHLI  240
EKIKQRKTLD NGTVTKKRRL ANTPCDNKCD GHSLQVQEEF TTIKSEIQTL FSSDESNSPA  300
NEQKMNGQDM SSENYILWEK LMEDDMIYEN GAENDKHYSD IVLELEDLIA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-224914717129Heat shock factor protein 1
5d5v_B2e-224914717129Heat shock factor protein 1
5d5v_D2e-224914717129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503803.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A1S4CRR30.0A0A1S4CRR3_TOBAC; heat stress transcription factor A-7a-like
STRINGXP_009606363.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-85heat shock transcription factor A2