PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016504238.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 323aa MW: 35737.8 Da PI: 8.8629

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016504238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.7e-13	255	300	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_016504238.1 255 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 300 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	249	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-16	252	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-11	253	302	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.6E-15	254	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-13	255	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-10	255	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDSEFDKNQN MNSGLLRFRS APSSLFENLT DGVIKIENFG SENKGFNLAG LNNQLVSQNS 60 QLPPQYPRQN TSANVGSTDG GGYRVMGSLG NNHERQNKLA SNLMRQNSSP AGLFSHLNSQ 120 IGYGTLKGGG GGGYRMANVA SGDSSPSSKV DNESSITTVP DDDKRRDGNS EAQFYNMGFP 180 FTSWNDSPQL DNEGKLFANA DQIEEVGNRP PILSHHLSLP KTPAEIAAIE KLLHFQDTIP 240 CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD LAVEYIKDLQ 300 KQYKTLTDHR ANCKCSAMQN QRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	3e-71	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016504238.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X2
Swissprot	Q66GR3	2e-74	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1S4CSZ7	0.0	A0A1S4CSZ7_TOBAC; transcription factor bHLH130-like isoform X2
STRING	XP_009769857.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]