PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016504239.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 231aa MW: 25531.7 Da PI: 8.9062

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016504239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.4e-13	163	208	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_016504239.1 163 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 208 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-16	160	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-11	161	210	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.3E-15	162	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-13	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-10	163	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGVSGYGTLK GGGGGGYRMA NVASGDSSPS SSRLKGHFSS FPSGTPSSLG MLSRISEVDN 60 ESSITTVPDD DKRRDGNSEA QFYNMGFPFT SWNDSPQLDN EGKLFANADQ IEEVGNRPPI 120 LSHHLSLPKT PAEIAAIEKL LHFQDTIPCK IRAKRGCATH PRSIAERVRR TRISERMRKL 180 QELVPNMDKQ TNTADMLDLA VEYIKDLQKQ YKTLTDHRAN CKCSAMQNQR V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	2e-71	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769873.1	1e-175	PREDICTED: transcription factor bHLH130-like isoform X2
Refseq	XP_016504239.1	1e-175	PREDICTED: transcription factor bHLH130-like isoform X3
Swissprot	Q66GR3	5e-64	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1S4CTA8	1e-173	A0A1S4CTA8_TOBAC; transcription factor bHLH130-like isoform X3
TrEMBL	A0A1U7VU47	1e-173	A0A1U7VU47_NICSY; transcription factor bHLH130-like isoform X2
STRING	XP_009769857.1	1e-170	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	9e-66	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]