PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504321.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 477aa    MW: 53235.5 Da    PI: 6.8351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.6e-2241142199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd++++  l++ ++ a ++       ++k+ + +l+++d++g +W++ + +r++++r++ltkGW++Fv +++L +gD+v+F +    +
  XP_016504321.1  41 FCKVLTASDTNSNWGLTVRREDAIKCfppldiTKQKPIQ-ELIVKDLNGSEWRFCHVFRGQPRRHLLTKGWSKFVASKKLVAGDSVIFLR--GGN 132
                     99****************************985555564.9************************************************4..378 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_016504321.1 133 GELCVGVRRQ 142
                     999****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-3538155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-2738144IPR015300DNA-binding pseudobarrel domain
CDDcd100174.78E-2240141No hitNo description
PROSITE profilePS5086312.13941143IPR003340B3 DNA binding domain
SMARTSM010191.5E-1841143IPR003340B3 DNA binding domain
PfamPF023623.0E-1941142IPR003340B3 DNA binding domain
PfamPF065078.1E-5166197IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
VEPDTDEVYA HITLLPEENQ SDQTTPDAWS PQPFNLQFQS FCKVLTASDT NSNWGLTVRR  60
EDAIKCFPPL DITKQKPIQE LIVKDLNGSE WRFCHVFRGQ PRRHLLTKGW SKFVASKKLV  120
AGDSVIFLRG GNGELCVGVR RQAHRRHNIG SSPVSSQTVQ GVLAVVSHAF ATGSLFSVYY  180
QPRKSRFILS LNKYLEPNRA KPSNQNSAQI ASNGLCTNQA SVDDLDCDVF SDIFLAAHPL  240
FLENTPEPNG NCVGVASTVQ NFEGWPESQR ESFTTYPQQP IPEPSASTST LQPTDTLQVM  300
CTYSTPRQLP TEGPGCGNEQ VSWAGYQVAQ RYVPILSRVI MRYPSTISGF KAITGALQSV  360
YLEMLAKLVD LLEKSRIGSM DNRNQFQVIK QYLVDLKFIG IDISWIETRL AQIDGVLKME  420
KLIQHQHTLA HRIDETQFTL GLLNQELGSV RKELEELTPK VGPTPPSKDC SILEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-73120384289Auxin response factor 1
4ldw_A3e-73120384289Auxin response factor 1
4ldw_B3e-73120384289Auxin response factor 1
4ldx_A3e-73120384289Auxin response factor 1
4ldx_B3e-73120384289Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504321.10.0PREDICTED: uncharacterized protein LOC107822302, partial
TrEMBLA0A1S4CT830.0A0A1S4CT83_TOBAC; Auxin response factor
STRINGXP_009588924.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.42e-72auxin response factor 1