PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504544.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 253aa    MW: 29086.8 Da    PI: 9.0291
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.11.3e-201865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll ++v+++G g+W++++r+ g++Rt+k+c++rw +yl
   XP_016504544.1 18 KGPWTPEEDKLLSEYVNLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYL 65
                     79********************************************97 PP
2Myb_DNA-binding49.31.1e-1571115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar+++ gRt +++k++w+++
   XP_016504544.1  71 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTNNEIKNYWRTH 115
                      6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5371365IPR017930Myb domain
SuperFamilySSF466891.03E-3115112IPR009057Homeodomain-like
SMARTSM007171.1E-171767IPR001005SANT/Myb domain
PfamPF002494.3E-191865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-241972IPR009057Homeodomain-like
CDDcd001673.34E-132065No hitNo description
PROSITE profilePS5129423.89466120IPR017930Myb domain
SMARTSM007173.4E-1370118IPR001005SANT/Myb domain
PfamPF002492.7E-1371115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2473119IPR009057Homeodomain-like
CDDcd001673.93E-975116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVGMMGWGAN SDQQGWRKGP WTPEEDKLLS EYVNLHGEGR WSSVSRCAGL NRTGKSCRLR  60
WVNYLRPGLK RGHITPQEEG IIIELHALWG NKWSTIARYL PGRTNNEIKN YWRTHFKKKQ  120
KASAKQDSKK KIQRQRNQQQ QNCTIANKLS PKAEEVIMQK SDEKIDNEYQ DAVTFTNYHQ  180
SMDPIVDLAP VMTSSDISYA WTDTIPMDGL WGGLWNLDVD DKCKVAIQNE PTTANYSYST  240
DYAVNLYNGG FIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24181197107B-MYB
1h8a_C1e-231811927127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754416e-50HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504544.10.0PREDICTED: myb-related protein 305-like
TrEMBLA0A1S4CU730.0A0A1S4CU73_TOBAC; myb-related protein 305-like
STRINGXP_009802593.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-68myb domain protein 121