PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016504592.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 114aa MW: 13148.8 Da PI: 6.6857

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016504592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.8	2.5e-28	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr rWt e H++Fveav++LGG+ +AtPk+i++lm+ +++t h+kSHLQkYR XP_016504592.1 27 KPRFRWTVEVHDHFVEAVNELGGPFEATPKNIMKLMDDEDITSGHIKSHLQKYRQ 81 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.02E-15	26	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-26	26	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-22	27	82	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-5	31	80	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MEEISKEQKG EETSEKAVVQ SHDLNRKPRF RWTVEVHDHF VEAVNELGGP FEATPKNIMK 60 LMDDEDITSG HIKSHLQKYR QSKDIISTPK TSKGKFSITY TPSVPIYVNL FDWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016504592.1	7e-81	PREDICTED: probable transcription factor KAN3 isoform X1
TrEMBL	A0A1S4CTM8	2e-79	A0A1S4CTM8_TOBAC; probable transcription factor KAN3 isoform X1
STRING	XP_009765181.1	1e-56	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12062	16	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.3	2e-21	myb-related protein 1