PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506045.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 231aa    MW: 26296.1 Da    PI: 9.6984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.35e-261610639128
             NAM  39 iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ P ++++ ++++ek+wyf+ +rd+ky+++ ++nr+t +++Wkatg+dk+++s+ +++ +glkk+ vfy+gra +g ktdW+m e+rl
  XP_016506045.1  16 FFESTPFRIEELASTGEKKWYFYRPRDHKYRNSAHPNRVTGASFWKATGTDKPIYSSdSTKCIGLKKSSVFYRGRAARGIKTDWMMREFRL 106
                     677889999877778999**************************************955666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.2931126IPR003441NAC domain
SuperFamilySSF1019414.18E-2615111IPR003441NAC domain
PfamPF023655.1E-930106IPR003441NAC domain
PfamPF161133.0E-19133196IPR032259Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type
Gene3DG3DSA:3.90.226.104.2E-9133195IPR029045ClpP/crotonase-like domain
SuperFamilySSF520968.71E-8133196IPR029045ClpP/crotonase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003860Molecular Function3-hydroxyisobutyryl-CoA hydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGFGAAFDGN GFCTNFFEST PFRIEELAST GEKKWYFYRP RDHKYRNSAH PNRVTGASFW  60
KATGTDKPIY SSDSTKCIGL KKSSVFYRGR AARGIKTDWM MREFRLPTTN IESAQPKKFL  120
DRNFPANVGP HPAGGDIKQI ATKKQQSDMI EVFTAEYPLI CKIFEYKKPY ISFMDGVTMG  180
FGIGLSGHGR YKLITEVLLY VYGGLLVYAS TSYLHDHCIY IVTRIDHQQV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-241410650140Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-65HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755172e-65HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506045.11e-175PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1S4CY051e-173A0A1S4CY05_TOBAC; NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.13e-45NAC domain containing protein 94