PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016506481.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 239aa MW: 27181.7 Da PI: 4.7923

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016506481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.3	4.7e-14	10	49	2	41
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ri ++s r+ + kR + ++KKAeE S+LCd+ vaviif XP_016506481.1 10 RIRSESVRNSILNKRAASLFKKAEEFSILCDVAVAVIIFN 49 79999999999***************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-10	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.572	1	50	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.74E-13	2	60	No hit	No description
SuperFamily	SSF55455	4.32E-17	3	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-5	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-13	10	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-5	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-5	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MARKKLRHTR IRSESVRNSI LNKRAASLFK KAEEFSILCD VAVAVIIFNQ GEIQPIAYPS 60 ITQAKDILMS YLSFSEAERL KKLVKHETYL LEKVNEQEEK ISKIEKLNEG KEMDILFNQL 120 VEGKNTNELD ARQLKGLLKL SAAKMAKLNE RKKQFNQQDQ PSESLYRPSD FKPVCENVAN 180 QTSDLQDFVP ATNLMEDLIN NPWFVENMAA DQNEFGTESA PEEGNDNNAG DDGNPEDLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593028.1	1e-176	PREDICTED: MADS-box protein AGL71-like
Refseq	XP_016506481.1	1e-176	PREDICTED: MADS-box protein AGL71-like
TrEMBL	A0A1S4CZD3	1e-174	A0A1S4CZD3_TOBAC; MADS-box protein AGL71-like
STRING	XP_009593028.1	1e-175	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	2e-19	AGAMOUS-like 96