PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506510.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 399aa    MW: 44642.3 Da    PI: 9.7445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13210255454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N++f+ Lr+llP+      +K +Ka++L  ++eY++sL
  XP_016506510.1 210 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYLSSL 255
                     68899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-12206260No hitNo description
PROSITE profilePS5088815.529206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-17207274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16209273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-11210255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-14212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGMTNLFAEY FSRPAPAATR GITNQLLPID QNRASSSSSF SIDSPGEYSS LLFNVASTPP  60
YVPEPPRTDT FSDQTIRPIP PVSATAMPYQ QAIQTLNQIQ GIQLPTLETA DAALTRAYLA  120
VMTSPSSSSS SRQSRENLPT DYNQIATQKA TAFRRFRSAL GPNVPIATAT TRRQNMFRRS  180
INFFRNLNMM RSRQEQMQPN PRAPTSTQVH HMISERRRRE KLNDSFQLLR SLLPPGTKKD  240
KASVLASTTE YLSSLKTQVE ELSKKNKMLE AQLLQRQNKS SFEPINQAAG EAIICSSTGG  300
NERLDVEIRN VGESTSESRI VDLQISVRRE CSILDLVTRL LEFLKSDNNV NLESVAANTR  360
SVVQSEPVTH ITLRLRIEGR EWDESSFEEA VKRVVDDLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219ERRRRE
2215220RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506510.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A1S4CZB50.0A0A1S4CZB5_TOBAC; putative transcription factor bHLH041
STRINGXP_009624851.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-58bHLH family protein