PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506754.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 310aa    MW: 36272.7 Da    PI: 7.2377
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.41.4e-1122862086
        trihelix 20 rlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yfd ++
  XP_016506754.1 22 SLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 86
                    577899***********9966667766579*****************98766664......3599999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-132588No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAPIWAAPPI TNYQNNHPHP XSLKKGQLKA SQWEEVAITV AARCGFDEPS KSATQCRHKI  60
EKLRKRYRAE RLKPYPNSWQ YFDLMDRMER GPLPISAHPV AMVKCQQNSN SISNLNSTAA  120
DHQRYYYDNN TDSDEVDALS YMDMRKNKCK SINHIVRGEM GLMGMNVNVV DHRTVNRMVK  180
DRNFNVFEQK DRNFDVMRGT RNPMNEKRKG YFGNVAIEDD DEDEDVEEEV DEENEGSVGG  240
SELAAEIRGF AERFMRMENK KIEMMKETER YRMEMEKRRM EMILENQRNL IDTINRVVGS  300
HKKVKVAQEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754453e-86HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506754.10.0PREDICTED: uncharacterized protein LOC107824489
TrEMBLA0A1S4D0F80.0A0A1S4D0F8_TOBAC; uncharacterized protein LOC107824489
STRINGXP_009792432.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.13e-18Trihelix family protein