PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016506815.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 345aa MW: 39155.6 Da PI: 8.4723

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016506815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	135.8	3.9e-42	102	243	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.....eaesssssasn 84 a kkdrhski T+ g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k ai el+++ +ss+ sec +es ++ + XP_016506815.1 102 AYKKDRHSKINTAHGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLTKSKSAINELVQStatgaisTSSTTSECevisgIDESTTTNDIQ 196 679***********************************************************8887776444446776665422222222223 PP TCP 85 sssgkaaksaakskksqksaasalnlakesrakarararertrekmr 131 ++ ++++ ++k+ ++ ++ a+++ +akesr++arararert+ k++ XP_016506815.1 197 KQPNRSKVGEKKKANKLARRAAFNPVAKESRKQARARARERTKIKKS 243 3334666666677777777777899999************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.8E-44	104	242	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.634	104	162	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.477	224	241	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MYPSSNICNY NPNISSSNNL FHIPSPNSMQ YEHELFQYFH DHHLLQPQQQ QLLLTTPDHY 60 MAADSNKDTV ISSTINQLEG PKEVELQGSC KNKNGENKRA VAYKKDRHSK INTAHGPRDR 120 RMRLSLDVAR KFFNLQDLLG FDKASKTVEW LLTKSKSAIN ELVQSTATGA ISTSSTTSEC 180 EVISGIDEST TTNDIQKQPN RSKVGEKKKA NKLARRAAFN PVAKESRKQA RARARERTKI 240 KKSLLNIGDQ SMAADDLKRL GCWSPFETGE ESGIQGYSTN HQVEDQHTTN HEEHLLGTKE 300 NVDGCNLVVT GNWNPFTIFN YHHNTEISHE QQFTNFQFSG KFWEV

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MYPSSNICNY NPNISSSNNL FHIPSPNSMQ YEHELFQYFH DHHLLQPQQQ QLLLTTPDHY  60
MAADSNKDTV ISSTINQLEG PKEVELQGSC KNKNGENKRA VAYKKDRHSK INTAHGPRDR  120
RMRLSLDVAR KFFNLQDLLG FDKASKTVEW LLTKSKSAIN ELVQSTATGA ISTSSTTSEC  180
EVISGIDEST TTNDIQKQPN RSKVGEKKKA NKLARRAAFN PVAKESRKQA RARARERTKI  240
KKSLLNIGDQ SMAADDLKRL GCWSPFETGE ESGIQGYSTN HQVEDQHTTN HEEHLLGTKE  300
NVDGCNLVVT GNWNPFTIFN YHHNTEISHE QQFTNFQFSG KFWEV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ194953	0.0	FJ194953.1 Nicotiana tabacum TCP1 protein-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016506815.1	0.0	PREDICTED: transcription factor DICHOTOMA-like
TrEMBL	A0A1S4D053	0.0	A0A1S4D053_TOBAC; transcription factor DICHOTOMA-like
STRING	XP_009592164.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2482	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-26	TCP domain protein 12