PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506830.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 338aa    MW: 36821.7 Da    PI: 8.6713
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-124975127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ + C++++rtG C yG++C+++H++
  XP_016506830.1 49 PGVPDCSYYMRTGSCGYGANCRYNHPR 75
                    5789*********************96 PP
2zf-CCCH413.2e-1396120327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtGtCk+G++CkF+H++
  XP_016506830.1  96 EPMCQYYLRTGTCKFGASCKFHHPK 120
                     789********************96 PP
3zf-CCCH37.93e-12200226127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++++tG Ck+G++C+++H+p
  XP_016506830.1 200 PGQPTCQYYMKTGDCKFGSSCRYHHPP 226
                     57899********************97 PP
4zf-CCCH28.23.2e-09247272227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +  +C+f++  G+Ck+G  CkF H++
  XP_016506830.1 247 GVQPCSFYLLKGFCKFGRACKFDHPM 272
                     6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5584876IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-74875IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-105075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.73293121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-696120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-698119IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-999120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.239199227IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6199226IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9201226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6203227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4205225IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6245272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587245273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5247274IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7247272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4249270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MELYGRSTAS NGSQSDHQSE WVPVEQETGL DESMQRLGLW GREIYPERPG VPDCSYYMRT  60
GSCGYGANCR YNHPRDRAYG GKMQLERVEF PERLGEPMCQ YYLRTGTCKF GASCKFHHPK  120
NLGGSLSNIP LNTHGYPVRP GPVSPALSPG AQPSAGVTSI YGISQLASST HAFAGTYSPL  180
HSAASPSSKT QKEKSFPERP GQPTCQYYMK TGDCKFGSSC RYHHPPDWIA SKTNCAISPL  240
GLPLRPGVQP CSFYLLKGFC KFGRACKFDH PMGTVQYSSS ASSLPDLPIA PYMLRSSFAF  300
APTLLPELQA GFVSGSKVDA ASLSRPSSSL KVQLVELT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-107HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776617.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
RefseqXP_016506830.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-106C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4D0650.0A0A1S4D065_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLA0A1U7W9D80.0A0A1U7W9D8_NICSY; zinc finger CCCH domain-containing protein 32-like isoform X2
STRINGXP_009776613.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-108C3H family protein