PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507073.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 123aa    MW: 14277.7 Da    PI: 10.3349
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK72.55.5e-233181252
          RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                    + +++l+d + y +lpi+ AAk+L++c+Tv+K+ CR+ G+ RWP+Rkiks+
  XP_016507073.1 31 TGKLRLKDFAGYLHLPIEVAAKKLNICPTVMKKVCRRDGLLRWPYRKIKSI 81
                    56899********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.43821101IPR003035RWP-RK domain
PfamPF020422.3E-203481IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MNQQEIKNEG EVNCNDMRYE KIPLSAQRER TGKLRLKDFA GYLHLPIEVA AKKLNICPTV  60
MKKVCRRDGL LRWPYRKIKS IRRKISKREK SLSSNDVEER ASAKADIAKL EEELAKIFEA  120
FVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771409.14e-83PREDICTED: uncharacterized protein LOC104221948
RefseqXP_016507073.11e-85PREDICTED: protein RKD4-like
TrEMBLA0A1S4D1762e-84A0A1S4D176_TOBAC; protein RKD4-like
TrEMBLA0A1U7W9T01e-81A0A1U7W9T0_NICSY; uncharacterized protein LOC104221948
STRINGXP_009771409.12e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35052027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.28e-08Nin-like family protein