PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507286.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 256aa    MW: 27762.8 Da    PI: 8.0577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-091181027
                    GGTS--TTTTT-SS-SSS CS
         zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                    ++tGtCk+G++CkF+H++
  XP_016507286.1  1 MKTGTCKFGATCKFHHPR 18
                    89**************96 PP
2zf-CCCH38.52e-126894127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+f+++tG CkyG++C+++H++
  XP_016507286.1 68 PGEVDCPFYLKTGSCKYGGTCRYNHPE 94
                    57899********************96 PP
3zf-CCCH42.98.1e-14148171326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+f+++tG+Ck+G+rCkF+H+
  XP_016507286.1 148 QIECDFYMKTGECKFGERCKFHHP 171
                     568********************9 PP
4zf-CCCH38.61.7e-12205226627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tG CkyG++CkF H+p
  XP_016507286.1 205 CPYYMKTGMCKYGATCKFDHPP 226
                     ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035625118IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-7118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.422119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4218IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-76794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1126795IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-106994IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-67195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-47394IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7145172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507145173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7148174IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-11149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5151171IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319199227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6203226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5205224IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9205226IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKTGTCKFGA TCKFHHPRDI QLPSPKQESG SAENPGSANN EMTEDVNLIK PLSVPALLHN  60
SKGLPIRPGE VDCPFYLKTG SCKYGGTCRY NHPERTAAIG PALVASPATH LNIGMVNPAA  120
SLLQNLDPRL TQTMLGLLSP VYPQRPGQIE CDFYMKTGEC KFGERCKFHH PLDRSAPLVS  180
AKDVQQPNVK LTLAGLPRRE GAVHCPYYMK TGMCKYGATC KFDHPPPGEV LGMATSQGAS  240
LSVEGEDTVD VKEQQQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755245e-72HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601117.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_016507286.10.0PREDICTED: zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q31e-105C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1S4D1L90.0A0A1S4D1L9_TOBAC; zinc finger CCCH domain-containing protein 37-like
STRINGXP_009601117.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-107floral homeotic protein (HUA1)