PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507386.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 140aa    MW: 16413.1 Da    PI: 8.657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.42.9e-08120139221
                     --SS-EEEEEEE--TT-SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefp 21 
                      Dgy+WrKYG+K+vk++++ 
  XP_016507386.1 120 YDGYKWRKYGKKKVKSNTNL 139
                     5***************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-8107140IPR003657WRKY domain
SuperFamilySSF1182901.31E-6112139IPR003657WRKY domain
PROSITE profilePS5081110.338114140IPR003657WRKY domain
PfamPF031061.3E-4121140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSSNFLETSN SQRGNPSFTS PFLYSHMTQD CGYNFQDCDF NNFQDFESSS FLDQLLVDYS  60
PTNNNFNTSL SENPNMQEIS STNINRLKEK SEEGKKKEKM NERHVQAIAF RTKTQLEILY  120
DGYKWRKYGK KKVKSNTNLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-37HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507386.11e-100PREDICTED: probable WRKY transcription factor 45
TrEMBLA0A1S4D1X93e-99A0A1S4D1X9_TOBAC; probable WRKY transcription factor 45
STRINGXP_009763636.18e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013