PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507792.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 962aa    MW: 107478 Da    PI: 6.3302
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.71.1e-53131273116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwl++ e++ iL+n+e  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_016507792.1  13 REgHFRWLRPAEVVFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNPNFQR 107
                     55588****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ ++e+ivlvhy++
  XP_016507792.1 108 RSYWMLDPAYEHIVLVHYRD 127
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.6138134IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7411129IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4716127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-9400487IPR013783Immunoglobulin-like fold
PfamPF018334.8E-8403478IPR002909IPT domain
CDDcd001026.49E-6403487No hitNo description
SuperFamilySSF812963.64E-18403487IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.204.0E-13602696IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.408602694IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.06E-14606696IPR020683Ankyrin repeat-containing domain
CDDcd002044.35E-12607694No hitNo description
PfamPF127966.5E-7622695IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843635667IPR002110Ankyrin repeat
SMARTSM0001564752774IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876753782IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-6802859IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.63811833IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.51812841IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011814832IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013834856IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883836860IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-5837856IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MAESGYNIND LVREGHFRWL RPAEVVFILQ NHEDQQLANQ PPQKPASGSM FLFNKRVLRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNPNFQRRSY WMLDPAYEHI  120
VLVHYRDITE IAAFMSQSSP ISSTFSLSPS LYSTQHPGFT VFGSESYQQY PNESSPGSGE  180
VCSDAGINGK GMNISDITGR TEGVSSSPRV EISQALRKLE EQLSLNDDSL EQIDPLYSEI  240
ENSDDVENFV HDNNSLVQIQ HKSNNLLLQP HSGESSESQH QLLNLDGNIW KEMLDHCRSF  300
PAAESPAKCF EKLDENGTLQ TSSGVGPIEA TESDRWLKFG GKALKSSLTN FKQVEDFKYP  360
ACARINTYGS YSDQYTTIFD QDQIGTSFED DMSLTIAQKQ KFTIHDISPD WGYSSEATKI  420
VIVGSFLCNP SEYTWTCMFD DIEVPVQIIN EGAIRCQAPP HLPCKVTLCV TTGNRVSCSE  480
VWEFEYRVKF DDHGQKNLAE VGGACKSSEE LLLLVRFVQM LLSDSSVQKG DGSGSSNDIL  540
ENSKASEDSW SQVIESLLFG TSTSMVTVDW LLQELLKDRL KQWLSSKLQV KNNQMGYSFS  600
RKEQGIIHMV AGLGFEWALH PILDAGVGVN FRDINGWTAL HWAARFGREK MVASLVASSA  660
FAGAVTDPSS QDPFGRTAAS IASSCGHKGV AGYLSEVALT SHLSSLTLEE NELSKGTADV  720
EAERTISSIS TTSAATHEDQ LSLKDTLAAV RNAAQAAARI QSAFRAHSFR KRRQREAARA  780
ATTSGDEYCV LSNDVLGLSA ASKLAFRNMR DYNSAALAIQ KKYRGWKCRK DFLAFRQKVV  840
KIQAHVRGYQ VRKEYKVCWA VGILEKVVLR WRRRGVGLRG FRLEEEPIEE SEDEDILKLF  900
RKQKVDAAIN EAVSRVLSMV DSPEARQQYH RILEKYRQAK AELGVNSDTV STAHGDISNS  960
DI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660470.0JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507792.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1S4D2Z90.0A0A1S4D2Z9_TOBAC; calmodulin-binding transcription activator 4-like isoform X2
STRINGXP_009592002.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]