PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507793.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 913aa    MW: 102088 Da    PI: 6.3438
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1154.52.4e-48131163105
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwl++ e++ iL+n+e  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_016507793.1  13 REgHFRWLRPAEVVFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNPNFQR 107
                     55588****************************************************************************************** PP

            CG-1  97 rcywlLeee 105
                     r+yw+L+ e
  XP_016507793.1 108 RSYWMLDPE 116
                     ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.4328138IPR005559CG-1 DNA-binding domain
SMARTSM010767.6E-6111122IPR005559CG-1 DNA-binding domain
PfamPF038597.6E-4216116IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.109.7E-10351438IPR013783Immunoglobulin-like fold
PfamPF018334.5E-8354429IPR002909IPT domain
CDDcd001026.09E-6354438No hitNo description
SuperFamilySSF812963.36E-18354438IPR014756Immunoglobulin E-set
PROSITE profilePS5029712.408553645IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-13553647IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.6E-14557647IPR020683Ankyrin repeat-containing domain
CDDcd002044.04E-12558645No hitNo description
PfamPF127966.1E-7573646IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843586618IPR002110Ankyrin repeat
SMARTSM0001564703725IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876704733IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.72E-6753810IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.63762784IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.51763792IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011765783IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013785807IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883787811IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-5788807IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MAESGYNIND LVREGHFRWL RPAEVVFILQ NHEDQQLANQ PPQKPASGSM FLFNKRVLRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNPNFQRRSY WMLDPESYQQ  120
YPNESSPGSG EVCSDAGING KGMNISDITG RTEGVSSSPR VEISQALRKL EEQLSLNDDS  180
LEQIDPLYSE IENSDDVENF VHDNNSLVQI QHKSNNLLLQ PHSGESSESQ HQLLNLDGNI  240
WKEMLDHCRS FPAAESPAKC FEKLDENGTL QTSSGVGPIE ATESDRWLKF GGKALKSSLT  300
NFKQVEDFKY PACARINTYG SYSDQYTTIF DQDQIGTSFE DDMSLTIAQK QKFTIHDISP  360
DWGYSSEATK IVIVGSFLCN PSEYTWTCMF DDIEVPVQII NEGAIRCQAP PHLPCKVTLC  420
VTTGNRVSCS EVWEFEYRVK FDDHGQKNLA EVGGACKSSE ELLLLVRFVQ MLLSDSSVQK  480
GDGSGSSNDI LENSKASEDS WSQVIESLLF GTSTSMVTVD WLLQELLKDR LKQWLSSKLQ  540
VKNNQMGYSF SRKEQGIIHM VAGLGFEWAL HPILDAGVGV NFRDINGWTA LHWAARFGRE  600
KMVASLVASS AFAGAVTDPS SQDPFGRTAA SIASSCGHKG VAGYLSEVAL TSHLSSLTLE  660
ENELSKGTAD VEAERTISSI STTSAATHED QLSLKDTLAA VRNAAQAAAR IQSAFRAHSF  720
RKRRQREAAR AATTSGDEYC VLSNDVLGLS AASKLAFRNM RDYNSAALAI QKKYRGWKCR  780
KDFLAFRQKV VKIQAHVRGY QVRKEYKVCW AVGILEKVVL RWRRRGVGLR GFRLEEEPIE  840
ESEDEDILKL FRKQKVDAAI NEAVSRVLSM VDSPEARQQY HRILEKYRQA KAELGVNSDT  900
VSTAHGDISN SDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660470.0JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507793.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X3
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1S4D3830.0A0A1S4D383_TOBAC; calmodulin-binding transcription activator 4-like isoform X3
STRINGXP_009592002.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]