PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508400.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 210aa    MW: 23831.5 Da    PI: 4.4058
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-108312347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia++++ gRt++++k++w+++
   XP_016508400.1  8 RWSKIASHLP-GRTDNEIKNHWNTH 31
                     5*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.77136IPR017930Myb domain
SuperFamilySSF466891.4E-9741IPR009057Homeodomain-like
CDDcd001671.01E-7832No hitNo description
PfamPF002493.3E-8831IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-14846IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
LPFKIVCRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG IDPVTHKPLS TNIEQPENLP  60
IQQEKVQEIM PPCTVNYVSI DQSAITEIKL DDDKMGTSSI NNNNNFDSTI VHEVNNNGFC  120
TDEVPLIEPH EILVPSKSTP STSSSSSSSS SSNIIEDLKF LPSFDDWPMG NDMGFGWEND  180
FSSTLDFLLN DDNDMNNVTY DESWKFEQLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2796120.0AB279612.1 Nicotiana tabacum NtMYBGR1 mRNA for MYB-related transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508400.11e-152PREDICTED: protein ODORANT1-like, partial
TrEMBLA0A1S4D4P51e-151A0A1S4D4P5_TOBAC; protein ODORANT1-like
STRINGXP_009616533.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.18e-31myb domain protein 43