PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508495.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 244aa    MW: 27218.5 Da    PI: 10.1335
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA84.61.5e-2679133258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VNaKQy++Il+RR+ Rak e e+kl  k rkp+lh SRh hA+rRpRg gGrF
  XP_016508495.1  79 GPIFVNAKQYHGILRRRKFRAK-EMENKL-LKPRKPFLHLSRHLHAMRRPRGGGGRF 133
                     69*******************9.566999.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-2976136IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115230.98977136IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-2080102IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.9E-2380133IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-20110133IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
LINNYAESQS GDSKSSEKLS NVVDGVSMKS SNTDYQGHFE PLIYAKYPYG EKSLGLFSTY  60
GSQVSGRVML PLNLTSDEGP IFVNAKQYHG ILRRRKFRAK EMENKLLKPR KPFLHLSRHL  120
HAMRRPRGGG GRFLNTRKMN GSTNDGTTKT SNRKSQPTGS QNSEVLQSDH IGNFNSPKET  180
TSRMSCNSSE VTSFYSRGDL DTYPVHNPRP SVQAFFYMMN TGHDILMGSK WGSAAADSCC  240
NLNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-1578136262HAPB protein
4g92_A3e-1578136262HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508495.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like, partial
TrEMBLA0A1S4D4Z10.0A0A1S4D4Z1_TOBAC; nuclear transcription factor Y subunit A-10-like
STRINGXP_009770986.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.38e-45nuclear factor Y, subunit A10