PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508620.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 326aa    MW: 36852.7 Da    PI: 8.3204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09179226455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_016508620.1 179 SHSLAERARREKISKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 226
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-16173239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-6173230No hitNo description
PROSITE profilePS5088814.958175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17175244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6179226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MLGCEEMRIL ERQRAIFERL YQCHQQLSSL PNQNLAQLNS LISEHKMDCN QVQNFPSKID  60
PQMDGNSPSL NMFGSEQKNW AGSNFTNNSL ELARQSLSTL SNSSITRTST KKRKTEFYEE  120
DDCKARKLEG EAGKVKSEIT VKSEKENSGN NSKENSKISE VKKLDYIHVR ARRGQATDSH  180
SLAERARREK ISKKMKCLQD LVPGCNKVIG KAGMLDEIIN YVQSLQKQVE FLSMKLAASN  240
LNTDNLVAKE FPSQMANFAN PACLQNNLFQ QQQGSSIGVA TMLPQRREDC LMSFPEAFLD  300
SSHVPAVQQL PNFENDLQCL FGIRFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-62HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508620.10.0PREDICTED: transcription factor BEE 3-like isoform X2
TrEMBLA0A1S4D5B70.0A0A1S4D5B7_TOBAC; transcription factor BEE 3-like isoform X2
STRINGXP_009803326.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.16e-45BR enhanced expression 2