PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508631.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26313.4 Da    PI: 5.2888
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508631.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-192474656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +ft+eq++ Le++F+++ ++  +++ eLA+ lgL+ rqV +WFqNrRa++k
  XP_016508631.1 24 RFTDEQVKLLESMFKQEIKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74
                    7*************************************************9 PP
2HD-ZIP_I/II120.77.3e-3923112493
     HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +r+++eqvklLE++F++e kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+E++y+ Lk+++d+l+ + ++L++e+e+L ++l+e
  XP_016508631.1  23 KRFTDEQVKLLESMFKQEIKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMEHEYRLLKAEFDKLNMQFQSLKQEKESLLKQLEE 112
                     8************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-191177IPR009057Homeodomain-like
PROSITE profilePS5007117.5891676IPR001356Homeobox domain
SMARTSM003892.3E-171880IPR001356Homeobox domain
PfamPF000468.0E-172474IPR001356Homeobox domain
CDDcd000861.68E-142477No hitNo description
Gene3DG3DSA:1.10.10.606.2E-202483IPR009057Homeodomain-like
PRINTSPR000313.7E-64756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000313.7E-65672IPR000047Helix-turn-helix motif
PfamPF021836.6E-1276117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEAEDTLTHG NTEPSNKKSK DGKRFTDEQV KLLESMFKQE IKLEPRKKLE LARDLGLQPR  60
QVAIWFQNRR ARWKSKQMEH EYRLLKAEFD KLNMQFQSLK QEKESLLKQL EELNDQLENN  120
HAGCSRGQDS LDSKIYTCSE NGGTDLELKD NISGCLNASV EGKKVNEVEN DREGRLIEHF  180
RWKEEPEFWN MEELGDSSLG SPGHWCAVGL GRTFDLSCGN SKWWEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876RRARWKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803292.11e-166PREDICTED: homeobox-leucine zipper protein ATHB-12-like
RefseqXP_016508631.11e-166PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1S4D5H41e-164A0A1S4D5H4_TOBAC; homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1U7YGQ41e-164A0A1U7YGQ4_NICSY; homeobox-leucine zipper protein ATHB-12-like
STRINGXP_009803292.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.25e-34homeobox 7