PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016509199.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 854aa MW: 97159.3 Da PI: 8.2799

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016509199.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.7	5.2e-25	104	210	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+eYAk++GF +++s++s+ +g +++++fvCs++g+++e +++ ++k r +r+ ++t+Cka+l+vk+++dg+w + XP_016509199.1 104 SFYKEYAKSIGFFSIIKASRRSRISGIFIDAKFVCSRYGSKQEPSTSvtepvpsadgagsipvrRKKGRINRSWSKTDCKACLHVKRRSDGRWII 198 5****************************************9999***********99999999********************* PP FAR1 79 tkleleHnHela 90 ++++eHnHe + XP_016509199.1 199 RTFVKEHNHETF 210 *******976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-22	104	210	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-29	328	422	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.423	608	644	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.1E-8	609	643	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	619	646	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MCEGTRLTTW IGGTHLTSMV IDLEHPSGDQ HKEKEDCGHH ICGATATASK SVCLDRGNAG 60 PSWNEGTSNG TYILPNADSL AVNCYRGLEP HDGMEFDSKE DAFSFYKEYA KSIGFFSIIK 120 ASRRSRISGI FIDAKFVCSR YGSKQEPSTS VTEPVPSADG AGSIPVRRKK GRINRSWSKT 180 DCKACLHVKR RSDGRWIIRT FVKEHNHETF PDRTNYLRGH RNTDLGKNGA DAFHSICGRT 240 KKTYVTMSRQ SGVMKKVEKQ KNVGTKSSPQ SLALDEGDAQ VMLEHFLYMQ DENPNFFYAM 300 DLNQEQRLRN VFWVDAKGRI DYSNFSDVVL VDTTYIKNDY KLRFVPFIGV NHHCQSILLG 360 CGLIANESKS TFVWLMRAWL RAMGGQAPKV ILTDQDNTLE EVIAEVLPDC CHCFCLWHVL 420 SNIQEKLGHV IRQHEDFLSK FNKCILRSAT NELFEKRWWK VVDRFDLRND LWIKSLYKDR 480 LRWVPTFMNN IFLAGMSTMQ RSESVSSLLE KCMLCRTTLK EFLDQYKKLL REKCQEEASA 540 DSETRHKQPG LKSPSPFEKQ MSTLYTHTIF KKFQAQVLGV VACHPKKESD DGAAATYRVQ 600 DFEENQEFVV VWSEKTSDAS CSCHLFEYNG FLCRHVMIVL QMAGVHNIPS KYILSRWTKG 660 AKSREKMREV NLVDSRVQRY NDLCQRAFEL GDEGSLSQES YNIVFNALEN FLRRCEAVND 720 PNLNESEPCF PTNQVFIDGN NPSKSNGKNI ARKEKGQSGL GEPTVDYPFQ SHSAMQPMGQ 780 INARFPAPGG YYSSPQIIQG VFLPFGAGTI EYKYPSLWQP TKHAGAGTVE YNCFNCRLPL 840 SLSTYIPWTG INVF

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MCEGTRLTTW IGGTHLTSMV IDLEHPSGDQ HKEKEDCGHH ICGATATASK SVCLDRGNAG  60
PSWNEGTSNG TYILPNADSL AVNCYRGLEP HDGMEFDSKE DAFSFYKEYA KSIGFFSIIK  120
ASRRSRISGI FIDAKFVCSR YGSKQEPSTS VTEPVPSADG AGSIPVRRKK GRINRSWSKT  180
DCKACLHVKR RSDGRWIIRT FVKEHNHETF PDRTNYLRGH RNTDLGKNGA DAFHSICGRT  240
KKTYVTMSRQ SGVMKKVEKQ KNVGTKSSPQ SLALDEGDAQ VMLEHFLYMQ DENPNFFYAM  300
DLNQEQRLRN VFWVDAKGRI DYSNFSDVVL VDTTYIKNDY KLRFVPFIGV NHHCQSILLG  360
CGLIANESKS TFVWLMRAWL RAMGGQAPKV ILTDQDNTLE EVIAEVLPDC CHCFCLWHVL  420
SNIQEKLGHV IRQHEDFLSK FNKCILRSAT NELFEKRWWK VVDRFDLRND LWIKSLYKDR  480
LRWVPTFMNN IFLAGMSTMQ RSESVSSLLE KCMLCRTTLK EFLDQYKKLL REKCQEEASA  540
DSETRHKQPG LKSPSPFEKQ MSTLYTHTIF KKFQAQVLGV VACHPKKESD DGAAATYRVQ  600
DFEENQEFVV VWSEKTSDAS CSCHLFEYNG FLCRHVMIVL QMAGVHNIPS KYILSRWTKG  660
AKSREKMREV NLVDSRVQRY NDLCQRAFEL GDEGSLSQES YNIVFNALEN FLRRCEAVND  720
PNLNESEPCF PTNQVFIDGN NPSKSNGKNI ARKEKGQSGL GEPTVDYPFQ SHSAMQPMGQ  780
INARFPAPGG YYSSPQIIQG VFLPFGAGTI EYKYPSLWQP TKHAGAGTVE YNCFNCRLPL  840
SLSTYIPWTG INVF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016509199.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X3
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1S4D7B6	0.0	A0A1S4D7B6_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X3
STRING	XP_009772328.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]