PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509420.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 330aa    MW: 36651.6 Da    PI: 9.3883
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.36e-3055138383
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas 83 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k++i++l+ ++ +++s +   ++ ++  + +
  XP_016509420.1  55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDATKHEIDKLPPLQMPPPSLShffNNTNNTYMRD 138
                     79*************************************************************888883333233333333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.09856114IPR017887Transcription factor TCP subgroup
PfamPF036342.9E-2756146IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNPSRNNSQA NKQEAAGHDH DTNKSKISRT PSSSSRQSWA GFKNPRIVRV SRSFGGKDRH  60
SKVCTVRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVI DWLLDATKHE IDKLPPLQMP  120
PPSLSHFFNN TNNTYMRDGP NQELLSLKES NHFDATTAFG KDKWIASNEQ ENKDGTNIGG  180
YVPLFSSQNI SSLPAGMLNS NIPFNNNYRN WEIPNSNLSL APFGNNNHTF SSQTEDNPIS  240
MSFPSGSHNL YFCPTATTLS SLVPAPFMST TNSQLNHFHF LNSSTTNSQH VLPNPLAPTL  300
QLISPPVKTS KTNDHPNGIN SQDNGDLDNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1961115155Putative transcription factor PCF6
5zkt_B2e-1961115155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509420.10.0PREDICTED: transcription factor TCP17-like
TrEMBLA0A1S4D7K20.0A0A1S4D7K2_TOBAC; transcription factor TCP17-like
STRINGXP_009795262.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.18e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5