PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509432.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 133aa    MW: 15054.5 Da    PI: 4.7514
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52e-12311061496
                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++ lp k + e   g+     +  ++ + +g++W++ ++ ++++    +++GWk Fv++n+Lk gD +vF+l + s++++++kv
  XP_016509432.1  31 YMMFLPAKICPELtpGE-----V-PVVLTCRGKKWDMFCSGDNQR---RFKQGWKFFVNDNNLKIGDGLVFELLECSRAKMTFKV 106
                     56677777776663222.....2.2456679********544444...4899********************7644555554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-1515109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1415110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-1416110No hitNo description
SMARTSM010190.002918112IPR003340B3 DNA binding domain
PROSITE profilePS5086311.87118112IPR003340B3 DNA binding domain
PfamPF023628.8E-1130106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAGSKDEDIS PLCGKPYFDF ILGQSNLEPK YMMFLPAKIC PELTPGEVPV VLTCRGKKWD  60
MFCSGDNQRR FKQGWKFFVN DNNLKIGDGL VFELLECSRA KMTFKVQILR GDFPAELTTE  120
PEDGTPENPI VLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792605.19e-95PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A1U7Y1E42e-93A0A1U7Y1E4_NICSY; B3 domain-containing protein Os04g0386900-like
STRINGXP_009792605.13e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-06B3 family protein