PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016509832.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 179aa MW: 20602 Da PI: 7.4943

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016509832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.6e-31	97	155	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C++ gC+vkk+ver+++d ++v++tYeg Hnhe XP_016509832.1 97 LDDGFKWRKYGKKMVKNSPNPRNYYKCSTGGCNVKKRVERDNDDSSYVITTYEGIHNHE 155 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-32	83	157	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-28	90	157	IPR003657	WRKY domain
PROSITE profile	PS50811	30.882	92	157	IPR003657	WRKY domain
SMART	SM00774	9.6E-36	97	156	IPR003657	WRKY domain
Pfam	PF03106	4.5E-24	98	155	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MENFQYSNPN PNYGATDFIE TPEFELSDYL FPVDGLNDDF LLQNEMTSEF IQSISSYSNP 60 APSSTNNIKC TKGVKKYNKV IAKSRVAFRF KSDLEVLDDG FKWRKYGKKM VKNSPNPRNY 120 YKCSTGGCNV KKRVERDNDD SSYVITTYEG IHNHESPCVL HFTQFPPNIP TYGLHNLHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	92	157	12	77	Probable WRKY transcription factor 4
2lex_A	3e-24	92	157	12	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	4e-41	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	4e-41	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779355.1	1e-132	PREDICTED: probable WRKY transcription factor 50
Refseq	XP_016509832.1	1e-132	PREDICTED: probable WRKY transcription factor 50
Swissprot	Q8VWQ5	3e-40	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A1S4D8U5	1e-131	A0A1S4D8U5_TOBAC; probable WRKY transcription factor 50
TrEMBL	A0A1U7WYP0	1e-131	A0A1U7WYP0_NICSY; probable WRKY transcription factor 50
STRING	XP_009779355.1	1e-132	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	5e-39	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]