PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510119.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 243aa    MW: 27309.4 Da    PI: 5.7556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.5e-06183227454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + n  E++RR ++++    L+ ++P +      +++ +++L +Av+Y+ksL
  XP_016510119.1 183 TSNCSEKKRR-KLKKMVKALKGIVPGS-----SRMNTVTVLDEAVRYLKSL 227
                     5689999998.7*************97.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.944178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-9180237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-8182238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-9182232No hitNo description
SMARTSM003537.3E-8185233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQSNYQFSPQ KPFFAPEDQA GGGNIFDIPS PSVFGAMALP TGFNPSVPVH GFEFQSSEAC  60
PKNFIIFDQT DYRSQIMFHP AMASKFPYPD LKFNAPYFQD GMERKVANNE NTEVSSYLKE  120
DSADINALLS FEEEEHEEYD DEEVSTARTD ANYGNSSPES YSNYDCQSKK SRTTSFRKSS  180
GSTSNCSEKK RRKLKKMVKA LKGIVPGSSR MNTVTVLDEA VRYLKSLKVE VQKHGVENLK  240
TFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510119.10.0PREDICTED: transcription factor bHLH144-like
TrEMBLA0A1S4DA830.0A0A1S4DA83_TOBAC; transcription factor bHLH144-like
STRINGXP_009801820.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.29e-29bHLH family protein