PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016510136.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 517aa MW: 57416 Da PI: 4.1454

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016510136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.4e-07	253	299	3	46
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 +W++eE+el+ ++v + W+ a +++ R++++++s++++ XP_016510136.1 253 KWSEEEEELFHEVVLSNPASvgknFWNHLAIEFP-SRSREELVSYYFN 299 8***********9988778888******.*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0017	250	303	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-6	253	299	IPR001005	SANT/Myb domain
CDD	cd00167	0.00628	253	299	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MELQPSXSKQ PRHEPSCQIV SVLELSRESV AVKAYASGGD EENSSSINPD ADNELDSHNV 60 AEALFSSGKE TDMCIYGSAS NSSWPTSCTS EEDIRPEAPF HILMSPEYYY FDHPFRGAAH 120 HGEMYSSLLS DPPQKMVPIG PDFQAELPEW GAFVNQDKPY MEGMRETMCP SSQADENKLA 180 GTSIIPMPAM ELCADNGENI VERGGECSCE DIGSIRCVRL HIMEAREKLK LALGEETFFR 240 LGFCDMGEVV AEKWSEEEEE LFHEVVLSNP ASVGKNFWNH LAIEFPSRSR EELVSYYFNA 300 FILRKRAEQN RLDPLHIDSD NDEWLEIVGD AAQEANMTDE DEESVVESPA YHNDLIGNGI 360 HEELDKHDED GGDATWEDYK ALNFGSRKVF TDVPESCPGE LFDSNSSYKL SLQPQDQGLS 420 NKVVKQEVQD GSCTTVAAGV TSESSLGQTN NGKRWANDIT GMGSGIEHDR VLGPCGGKEW 480 DVGYLSCARN EVDLLPTRTM IEEVFGDGAW IYKSRDG

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MELQPSXSKQ PRHEPSCQIV SVLELSRESV AVKAYASGGD EENSSSINPD ADNELDSHNV  60
AEALFSSGKE TDMCIYGSAS NSSWPTSCTS EEDIRPEAPF HILMSPEYYY FDHPFRGAAH  120
HGEMYSSLLS DPPQKMVPIG PDFQAELPEW GAFVNQDKPY MEGMRETMCP SSQADENKLA  180
GTSIIPMPAM ELCADNGENI VERGGECSCE DIGSIRCVRL HIMEAREKLK LALGEETFFR  240
LGFCDMGEVV AEKWSEEEEE LFHEVVLSNP ASVGKNFWNH LAIEFPSRSR EELVSYYFNA  300
FILRKRAEQN RLDPLHIDSD NDEWLEIVGD AAQEANMTDE DEESVVESPA YHNDLIGNGI  360
HEELDKHDED GGDATWEDYK ALNFGSRKVF TDVPESCPGE LFDSNSSYKL SLQPQDQGLS  420
NKVVKQEVQD GSCTTVAAGV TSESSLGQTN NGKRWANDIT GMGSGIEHDR VLGPCGGKEW  480
DVGYLSCARN EVDLLPTRTM IEEVFGDGAW IYKSRDG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016510136.1	0.0	PREDICTED: uncharacterized protein LOC107827505
TrEMBL	A0A1S4D9R9	0.0	A0A1S4D9R9_TOBAC; uncharacterized protein LOC107827505
STRING	XP_009761171.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25